I've finally had my main thesis chapter published! A lot of hard work and two rounds of edits following reviewer comments and it has finally been released online. See it here for non-paywall freely available copy:
A spatially explicit agent-based model of the interactions between jaguar populations and their habitats:
https://drive.google.com/file/d/0B2itFn5PP0TCenl5cWpKazFBUmM/view?usp=sharing
This should be freely available now. Let me know if there are any problems.